PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.G00175.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 177aa    MW: 20085.1 Da    PI: 4.7049
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.G00175.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB160.82e-5048141497
             NF-YB   4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                       + r+lPianv+rimk++lP+nakisk+aket+qec+sefi+fvt+eas+kc++e+rkt+ngdd++wa+++lGf+dyv plk yl ++r++eg+
  Migut.G00175.1.p  48 ESRLLPIANVGRIMKQTLPNNAKISKEAKETMQECASEFIGFVTGEASEKCRKERRKTVNGDDICWAMGQLGFDDYVGPLKRYLIRFRDFEGN 140
                       679****************************************************************************************98 PP

             NF-YB  97 k 97 
                       +
  Migut.G00175.1.p 141 N 141
                       6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.6E-4647168IPR009072Histone-fold
SuperFamilySSF471131.34E-3649156IPR009072Histone-fold
PfamPF008087.8E-2751115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.5E-147997No hitNo description
PRINTSPR006151.5E-1498116No hitNo description
PRINTSPR006151.5E-14117135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSSSNNNHIN STSKRPIFSL RSTVDIDPEA NDDDQRSRST ADTDQYSESR LLPIANVGRI  60
MKQTLPNNAK ISKEAKETMQ ECASEFIGFV TGEASEKCRK ERRKTVNGDD ICWAMGQLGF  120
DDYVGPLKRY LIRFRDFEGN NNNNNNINNN ININRVGVNI IDEEEMLMEE ENNQKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B3e-3850136692Transcription factor HapC (Eurofung)
4g91_B3e-3850136692Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828059.11e-106PREDICTED: nuclear transcription factor Y subunit B-5-like, partial
SwissprotO822486e-51NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A022RTW12e-76A0A022RTW1_ERYGU; Uncharacterized protein (Fragment)
STRINGPOPTR_0008s22520.19e-56(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.15e-51nuclear factor Y, subunit B5